Yeah, I agree and this is why I have not done this to my car.
Besides what you list, manual trans guys have to worry about boiling the clutch fluid. Thus a good header and possibly wrapping it may stop this.
If anything, I will get a set of Z06 headers and use them. Gains would probably be minimal at the most. I'll take my 330/340 RW power numbers as is though.
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1998 Six Speed, Torch Red Coupe - K&N CAI, Vararam Velocity Stack, Z06 exhaust, Z06 sway bars, Z06 intake, C6 Z06 shifter, stainless steel brake lines, Z06 shocks, Borla X pipe, drilled/slotted rotors. Dyno'ed at 330 RWHP & 340 RWTQ.